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Informatics

includes computer databases, phyloinformatics

Challenging Wallacean and Linnean shortfalls: knowledge gradients and conservation planning in a biodiversity hotspot

  • Neotropics
  • Informatics
  • Biogeography
  • Frogs
Challenging Wallacean and Linnean shortfalls: knowledge gradients and conservation planning in a biodiversity hotspot, Bini, L., Diniz-Filho J., Rangel T., Bastos R., and Pinto M. , Diversity and Distributions, Volume 12, Number 5, p.475-482, (2006)
  • 1953 reads
  • 1 attachment
  • Google Scholar

An ontology for Xenopus anatomy and development

  • Informatics
  • Development
  • Larvae
  • Morphology
  • Frogs
An ontology for Xenopus anatomy and development, Segerdell, Erik, Bowes Jeff B., Pollet Nicolas, and Vize Peter D. , BMC developmental biology, Jan 1, Volume 8, p.92, (2008)
  • 835 reads
  • 1 attachment
  • Google Scholar

Developing a Digital U.S. Biological Collections National Resource

  • ATree News
  • Taxonomy
  • Informatics

Participants in a focus group, held at the National Evolutionary Synthesis Center February 5-7, 2010, drafted an outline for the digitization and web mobilization of data and images associated with U.S. biological collections. Input from the community is requested as this plan develops to ensure that it builds appropriately on existing projects and reflects the missions and needs of the nation's diverse biological collections.

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  • 962 reads

ETE: A Python Environment for Tree Exploration

  • Methods
  • Informatics
ETE: A Python Environment for Tree Exploration, Huerta-Cepas, Jaime, Dopazo Joaquín, and Gabaldón Toni , BMC bioinformatics, Jan 1, Volume 11, p.24, (2010)
  • 1069 reads
  • 1 attachment
  • Google Scholar

The Tree of Life Web Project

  • Taxonomy
  • Informatics
  • Biodiversity
The Tree of Life Web Project, Maddison, David, Schulz Katja-Sabine, and Maddison Wayne , Zootaxa, Dec 20, Volume 1668, p.19-40, (2007)
  • 587 reads
  • 1 attachment
  • Google Scholar

BLAST-EXPLORER helps you building datasets for phylogenetic analysis

  • Taxonomy
  • Informatics
BLAST-EXPLORER helps you building datasets for phylogenetic analysis, Dereeper, Alexis, Audic Stephane, Claverie Jean-Michel, and Blanc Guillaume , BMC Evol Biol, Jan 1, Volume 10, p.8, (2010)
  • 800 reads
  • Google Scholar

ZooBank: Developing a nomenclature tool for unifying 250 years of biological information.

  • Taxonomy
  • Informatics
ZooBank: Developing a nomenclature tool for unifying 250 years of biological information., Pyle, Richard L., and Michel Ellinor , Zootaxa, Volume 1950, p.39-50, (2008)
  • 508 reads
  • 1 attachment
  • Google Scholar

Crunching the Data for the Tree of Life (in the NY Times)

  • ATree News
  • Informatics

Feb 10, 2009

By Carl Zimmer

This article in the New York Times mentions comments by ATree PI David Hillis.

  • 742 reads

Naming taxa from cladograms: some confusions, misleading statements, and necessary clarifications.

  • Informatics
Naming taxa from cladograms: some confusions, misleading statements, and necessary clarifications., Dubois, Alain , Cladistics, Volume 23, p.390-402, (2007)
  • 461 reads
  • 1 attachment
  • Google Scholar

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Recent Publications

  • Vast underestimation of Madagascar's biodiversity evidenced by an integrative amphibian inventory
  • Philippines frogs of the genus Leptobrachium (AnuraL Megophryidae): Phylogeny-based species delimitation, taxonomic review, and descriptions of three new species
  • Philippines frogs of the genus Leptobrachium (Anura: Megophryidae): Phylogeny-based species delimitation, taxonomic review, and descriptions of three new species
  • Examination of the molecular relationships of sand frogs (Anura: Pyxicephalidae: Tomopterna) and resurrection of two species from the Horn of Africa.
  • The deadly chytrid fungus: a story of an emerging pathogen
  • The Retention of the Lateral-Line Nucleus in Adult Anurans
  • Giant dwarfs: discovery of a radiation of large-bodied'stump-toed frogs' from karstic cave environments of northern Madagascar
  • Phylogeographic and demographic effects of Pleistocene climatic fluctuations in a montane salamander, Plethodon fourchensis
  • Potential causes for amphibian declines in Puerto Rico
  • Enzootic and epizootic dynamics of the chytrid fungal pathogen of amphibians
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